Plots for O-Bayes 17

Correlated null

FDR & Power

No id variables; using all as measure variables

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

No id variables; using all as measure variables

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

No id variables; using all as measure variables

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

No id variables; using all as measure variables

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

Deconvolution

Corr vs Indep

The following plots show that although the performance of CASH is not ideal for the more sparse case (\(\pi_0 = 0.9\)), it gives results under correlation similar to what other methods give under independence.

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

Peculiarities of correlation

Session information

sessionInfo()

R version 3.4.3 (2017-11-30)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.2

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ggplot2_2.2.1     reshape2_1.4.3    edgeR_3.20.2     
 [4] limma_3.34.4      ashr_2.2-2        Rmosek_8.0.69    
 [7] PolynomF_1.0-1    CVXR_0.94-4       REBayes_1.2      
[10] Matrix_1.2-12     SQUAREM_2017.10-1 EQL_1.0-0        
[13] ttutils_1.0-1    

loaded via a namespace (and not attached):
 [1] gmp_0.5-13.1      Rcpp_0.12.14      plyr_1.8.4       
 [4] compiler_3.4.3    git2r_0.20.0      R.methodsS3_1.7.1
 [7] R.utils_2.6.0     iterators_1.0.9   tools_3.4.3      
[10] digest_0.6.13     bit_1.1-12        tibble_1.3.4     
[13] gtable_0.2.0      evaluate_0.10.1   lattice_0.20-35  
[16] rlang_0.1.4       foreach_1.4.4     yaml_2.1.16      
[19] parallel_3.4.3    Rmpfr_0.6-1       ECOSolveR_0.3-2  
[22] stringr_1.2.0     knitr_1.17        locfit_1.5-9.1   
[25] rprojroot_1.3-1   bit64_0.9-7       grid_3.4.3       
[28] R6_2.2.2          rmarkdown_1.8     magrittr_1.5     
[31] scales_0.5.0      MASS_7.3-47       backports_1.1.2  
[34] codetools_0.2-15  htmltools_0.3.6   scs_1.1-1        
[37] colorspace_1.3-2  labeling_0.3      stringi_1.1.6    
[40] lazyeval_0.2.1    munsell_0.4.3     doParallel_1.0.11
[43] pscl_1.5.2        truncnorm_1.0-7   R.oo_1.21.0