Last updated: 2022-06-16

Checks: 2 0

Knit directory: lps/analysis/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 3f6eb5d

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 3f6eb5d. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    data/raw_read_counts.csv.gz
    Ignored:    output/fit-lps-k=16.RData
    Ignored:    output/fits-lps-bytissue.RData
    Ignored:    output/gsea-lps-k=16-CP+GO-only.RData
    Ignored:    output/gsea-lps-k=16.RData

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 3f6eb5d Peter Carbonetto 2022-06-16 workflowr::wflow_publish("index.Rmd")
html f30d80f Peter Carbonetto 2022-06-14 Added link to overview page.
Rmd c4234dc Peter Carbonetto 2022-06-14 workflowr::wflow_publish("index.Rmd", verbose = TRUE)
html 31b3ee6 Peter Carbonetto 2022-06-14 Build site.
Rmd 7f54117 Peter Carbonetto 2022-06-14 workflowr::wflow_publish("index.Rmd")
html f10da4f Peter Carbonetto 2022-05-04 Fixed link in overview page.
Rmd f4c125b Peter Carbonetto 2022-05-04 workflowr::wflow_publish("index.Rmd")
html e01a993 Peter Carbonetto 2022-05-04 First build of overview page.
Rmd 790233f Peter Carbonetto 2022-05-04 workflowr::wflow_publish("index.Rmd")
Rmd a3f3552 Peter Carbonetto 2022-05-04 A few small edits.
Rmd 0c9d482 Peter Carbonetto 2022-05-03 Added workflowr files.

Follow the links below to browse the results of the analyses.